Open4
Long-read-seq
ピン留めされたアイテム
F.H.HLong read sequencing technology
- PacBio, ONT (nanopore) 等の長い塩基配列を読むテクノロジー
- 情報収集、script
Links
F.H.HBenchmark of long read RNA-seq isoform analysis applications
- One of the many benchmark articles
- If not have access right.
- Research briefing
- used data, tools, scripts
F.H.HLong read sequencing applications
Transcriptome, isoform detection
- cDNA-seq (ONT)
- direct RNA-seq (ONT)
- PacBio Iso-seq
whole genome sequencing
- Mapping
- de novo assembly
Whole Exome sequence
Repeat
- genome seq?
F.H.HDorado requirement
Linux x64 or Windows systems not listed above but which have Nvidia GPUs with ≥8 GB VRAM and architecture from Pascal onwards (except P100/GP100) have not been widely tested but are expected to work. When basecalling with Apple devices, we recommend systems with ≥16 GB of unified memory.