T.Y.

<h1 id="long-read-sequencing-technology">
<a class="header-anchor-link" href="#long-read-sequencing-technology" aria-hidden="true"></a> Long read sequencing technology</h1>
<ul>
<li>PacBio, ONT (nanopore) 等の長い塩基配列を読むテクノロジー</li>
<li>情報収集、script</li>
</ul>
<h2 id="links">
<a class="header-anchor-link" href="#links" aria-hidden="true"></a> Links</h2>
<ul>
<li><a href="https://www.pacb.com/japan/" target="_blank" rel="nofollow noopener noreferrer">PacBio Japan</a></li>
<li><a href="https://nanoporetech.com/ja/" target="_blank" rel="nofollow noopener noreferrer">Nanopore tech</a></li>
</ul>


<h1 id="benchmark-of-long-read-rna-seq-isoform-analysis-applications">
<a class="header-anchor-link" href="#benchmark-of-long-read-rna-seq-isoform-analysis-applications" aria-hidden="true"></a> Benchmark of long read RNA-seq isoform analysis applications</h1>
<p><span class="embed-block zenn-embedded zenn-embedded-card"><iframe id="zenn-embedded__14fe8315f36cd" src="https://embed.zenn.studio/card#zenn-embedded__14fe8315f36cd" data-content="https%3A%2F%2Fwww.nature.com%2Farticles%2Fs41592-023-02026-3" frameborder="0" scrolling="no" loading="lazy"></iframe></span><a href="https://www.nature.com/articles/s41592-023-02026-3" style="display:none" target="_blank" rel="nofollow noopener noreferrer">https://www.nature.com/articles/s41592-023-02026-3</a></p>
<ul>
<li>One of the many benchmark articles</li>
</ul>
<p><span class="embed-block zenn-embedded zenn-embedded-card"><iframe id="zenn-embedded__8166abe28db3d" src="https://embed.zenn.studio/card#zenn-embedded__8166abe28db3d" data-content="https%3A%2F%2Fwww.biorxiv.org%2Fcontent%2F10.1101%2F2022.07.22.501076v3.full" frameborder="0" scrolling="no" loading="lazy"></iframe></span><a href="https://www.biorxiv.org/content/10.1101/2022.07.22.501076v3.full" style="display:none" target="_blank" rel="nofollow noopener noreferrer">https://www.biorxiv.org/content/10.1101/2022.07.22.501076v3.full</a></p>
<ul>
<li>If not have access right.</li>
</ul>
<p><span class="embed-block zenn-embedded zenn-embedded-card"><iframe id="zenn-embedded__86be5e264c787" src="https://embed.zenn.studio/card#zenn-embedded__86be5e264c787" data-content="https%3A%2F%2Fwww.nature.com%2Farticles%2Fs41592-023-02027-2" frameborder="0" scrolling="no" loading="lazy"></iframe></span><a href="https://www.nature.com/articles/s41592-023-02027-2" style="display:none" target="_blank" rel="nofollow noopener noreferrer">https://www.nature.com/articles/s41592-023-02027-2</a></p>
<ul>
<li>Research briefing</li>
</ul>
<p><span class="embed-block zenn-embedded zenn-embedded-card"><iframe id="zenn-embedded__2930da5dd058a" src="https://embed.zenn.studio/card#zenn-embedded__2930da5dd058a" data-content="https%3A%2F%2Fgithub.com%2FXueyiDong%2FLongReadBenchmark" frameborder="0" scrolling="no" loading="lazy"></iframe></span><a href="https://github.com/XueyiDong/LongReadBenchmark" style="display:none" target="_blank" rel="nofollow noopener noreferrer">https://github.com/XueyiDong/LongReadBenchmark</a></p>
<ul>
<li>used data, tools, scripts</li>
</ul>


<h1 id="long-read-sequencing-applications">
<a class="header-anchor-link" href="#long-read-sequencing-applications" aria-hidden="true"></a> Long read sequencing applications</h1>
<h2 id="transcriptome%2C-isoform-detection">
<a class="header-anchor-link" href="#transcriptome%2C-isoform-detection" aria-hidden="true"></a> Transcriptome, isoform detection</h2>
<ul>
<li>cDNA-seq (ONT)</li>
<li>direct RNA-seq (ONT)</li>
<li>PacBio Iso-seq</li>
</ul>
<h2 id="whole-genome-sequencing">
<a class="header-anchor-link" href="#whole-genome-sequencing" aria-hidden="true"></a> whole genome sequencing</h2>
<ul>
<li>Mapping</li>
<li>de novo assembly</li>
</ul>
<h2 id="whole-exome-sequence">
<a class="header-anchor-link" href="#whole-exome-sequence" aria-hidden="true"></a> Whole Exome sequence</h2>
<h2 id="repeat">
<a class="header-anchor-link" href="#repeat" aria-hidden="true"></a> Repeat</h2>
<ul>
<li>genome seq?</li>
</ul>
