Open3
Journal Club
Population genetics シミュレーションの標準化のための試み。
以下、Github
整備されたdocument
人類に使用されている植物のグローバルな分布
The global distribution of plants used by humans
- Open. Free access
- Pironon et al., Science 383, 293–297 (2024)
Materials and Github codes
- [Ref.50] S. Pironon, I. Ondo, M. Diazgranados, R. Allkin, A. C. Baquero, R. Cámara-Leret, C. Canteiro, Z. Dennehy-Carr, R. Govaerts, S. Hargreaves, A. J. Hudson, R. Lemmens, W. Milliken, M. Nesbitt, K. Patmore, G. Schmelze, R. M. Turner, T. R. van Andel, T. Ulian, A. Antonelli, K. J. Willis, The global distribution of plants used by humans datasets: list of utilised species, occurrence data and model outputs at 10 arc-minutes spatial resolution [Data set], Zenodo (2023)
- [Ref.51] I. Ondo, IanOndo/UsefulPlants: UsefulPlants (v1.0.0), Zenodo, (2023)
- UsefulPlants
- UsefulPlants is an R package primarily developed as supporting software for the results and analyses conducted in the article “The global distribution of plants used by humans” (Pironon S. 2023). It relies upon the R package rsdm (Ondo 2023) for building species distribution models (SDMs) of plants used by humans at large scale, thus it helps to streamline global biodiversity analyses, improve code accessibility and reproducibility.
- rsdm
- rsdm is a package designed to help streamlining species distribution analyses for large-scale assessments of biodiversity patterns. The package contains a set of helper functions to facilitate the collation and curation of species occurrence data, the building and assessment of species distribution models, the projection and the mapping of the geographic range of species and biodiversity patterns. It is also equipped with experimental wrapper functions for developing modelling pipelines and thus processing large quantities of data simultaneously.
- PK model + cancer cell evolutionary model (branch model)